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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003849
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCTATATTTTGGGACGGAGG
miRNA*
TCTGTCCCGAAATNTTACAAT
mismatches:
1
bulges:
2
View larger
pre-miRNA
TGGTTGCATTGGTATGTACTNCC
TCTGTCCCGAAATNTTACAAT
TTTTAGCTACGAATCTGGNCATNTAGGTGACCAGATTCATAGCTAAAAAT
TGCTAT
ATTTTGGGACGGAGG
TAGTACGTACTANCCATACT
dot-bracket secondary structure
.(((((...(((((((((((.((
(((((((((((((..((((((
(((((((((.((((((((.(((....))).)))))))).)))))))))))
)).)).
)))))))))))))))
.)))))))))))..)).)))
SIMILARITIES
miRBase
osa-MIR1439
:
5e-16
PMRD
osa-miR1439
:
5e-16
microPC
no hits
UniProt
no hits
RFAM
MIR1122: 1e-50
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record